Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.14" 2022-01-18; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact/ -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Benchmark_Kit30/VLA16-VLA19                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  55,174,609
 Normal Paired: 27,455,891 (49.76%)
 Chimeric Paired: 19,272,407 (34.93%)
 Chimeric Ambiguous: 5,774,818 (10.47%)
 Unmapped: 2,671,493 (4.84%)
 Ligation Motif Present: 28,169,431 (51.06%)
Alignable (Normal+Chimeric Paired): 46,728,298 (84.69%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-03-20T05:04:01,522]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,160,746 (76.41%)
PCR Duplicates: 4,403,928 (7.98%)
Optical Duplicates: 163,624 (0.30%)
Library Complexity Estimate: 230,395,024
Intra-fragment Reads: 4,849,135 (8.79% / 11.50%)
Below MAPQ Threshold: 4,641,619 (8.41% / 11.01%)
Hi-C Contacts: 32,669,992 (59.21% / 77.49%)
 Ligation Motif Present: 17,219,519  (31.21% / 40.84%)
 3' Bias (Long Range): 68% - 32%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 19,775,721  (35.84% / 46.91%)
Intra-chromosomal: 12,894,271  (23.37% / 30.58%)
Short Range (<20Kb): 3,800,770  (6.89% / 9.01%)
Long Range (>20Kb): 9,093,498  (16.48% / 21.57%)